hitrace matlab package Search Results


hitrace software package version 2 0  (MathWorks Inc)
96
MathWorks Inc hitrace software package version 2 0
Hitrace Software Package Version 2 0, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/hitrace software package version 2 0/product/MathWorks Inc
Average 96 stars, based on 1 article reviews
hitrace software package version 2 0 - by Bioz Stars, 2026-05
96/100 stars
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hitrace matlab package  (MathWorks Inc)
93
MathWorks Inc hitrace matlab package
Data-guided RNA secondary structure prediction of medaka and human CR4/5 domain. SHAPE (1M7) reactivity data were used as weights to guide RNA structure prediction for medaka (A) and human (B) CR4/5 domains. Using the Biers package of <t>HiTRACE,</t> RNAstructure models of each RNA domain were calculated with 100 bootstrap replicates, while varying the SHAPE slope parameter in intervals of 0.2 kcal/mol. The abundance of each helical RNA element (Confidence) derives from the bootstrap replicates and is plotted for each respective value of SHAPE slope. Ref. Pin refers to Reference hairpin.
Hitrace Matlab Package, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/hitrace matlab package/product/MathWorks Inc
Average 93 stars, based on 1 article reviews
hitrace matlab package - by Bioz Stars, 2026-05
93/100 stars
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mart 1plenticrispr v2  (Addgene inc)
96
Addgene inc mart 1plenticrispr v2
Data-guided RNA secondary structure prediction of medaka and human CR4/5 domain. SHAPE (1M7) reactivity data were used as weights to guide RNA structure prediction for medaka (A) and human (B) CR4/5 domains. Using the Biers package of <t>HiTRACE,</t> RNAstructure models of each RNA domain were calculated with 100 bootstrap replicates, while varying the SHAPE slope parameter in intervals of 0.2 kcal/mol. The abundance of each helical RNA element (Confidence) derives from the bootstrap replicates and is plotted for each respective value of SHAPE slope. Ref. Pin refers to Reference hairpin.
Mart 1plenticrispr V2, supplied by Addgene inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/mart 1plenticrispr v2/product/Addgene inc
Average 96 stars, based on 1 article reviews
mart 1plenticrispr v2 - by Bioz Stars, 2026-05
96/100 stars
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pspax2 didier trono  (Addgene inc)
98
Addgene inc pspax2 didier trono
Data-guided RNA secondary structure prediction of medaka and human CR4/5 domain. SHAPE (1M7) reactivity data were used as weights to guide RNA structure prediction for medaka (A) and human (B) CR4/5 domains. Using the Biers package of <t>HiTRACE,</t> RNAstructure models of each RNA domain were calculated with 100 bootstrap replicates, while varying the SHAPE slope parameter in intervals of 0.2 kcal/mol. The abundance of each helical RNA element (Confidence) derives from the bootstrap replicates and is plotted for each respective value of SHAPE slope. Ref. Pin refers to Reference hairpin.
Pspax2 Didier Trono, supplied by Addgene inc, used in various techniques. Bioz Stars score: 98/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pspax2 didier trono/product/Addgene inc
Average 98 stars, based on 1 article reviews
pspax2 didier trono - by Bioz Stars, 2026-05
98/100 stars
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pmdlg prre didier trono  (Addgene inc)
96
Addgene inc pmdlg prre didier trono
Data-guided RNA secondary structure prediction of medaka and human CR4/5 domain. SHAPE (1M7) reactivity data were used as weights to guide RNA structure prediction for medaka (A) and human (B) CR4/5 domains. Using the Biers package of <t>HiTRACE,</t> RNAstructure models of each RNA domain were calculated with 100 bootstrap replicates, while varying the SHAPE slope parameter in intervals of 0.2 kcal/mol. The abundance of each helical RNA element (Confidence) derives from the bootstrap replicates and is plotted for each respective value of SHAPE slope. Ref. Pin refers to Reference hairpin.
Pmdlg Prre Didier Trono, supplied by Addgene inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pmdlg prre didier trono/product/Addgene inc
Average 96 stars, based on 1 article reviews
pmdlg prre didier trono - by Bioz Stars, 2026-05
96/100 stars
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resource source identifier envelope plasmid  (Addgene inc)
98
Addgene inc resource source identifier envelope plasmid
Data-guided RNA secondary structure prediction of medaka and human CR4/5 domain. SHAPE (1M7) reactivity data were used as weights to guide RNA structure prediction for medaka (A) and human (B) CR4/5 domains. Using the Biers package of <t>HiTRACE,</t> RNAstructure models of each RNA domain were calculated with 100 bootstrap replicates, while varying the SHAPE slope parameter in intervals of 0.2 kcal/mol. The abundance of each helical RNA element (Confidence) derives from the bootstrap replicates and is plotted for each respective value of SHAPE slope. Ref. Pin refers to Reference hairpin.
Resource Source Identifier Envelope Plasmid, supplied by Addgene inc, used in various techniques. Bioz Stars score: 98/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/resource source identifier envelope plasmid/product/Addgene inc
Average 98 stars, based on 1 article reviews
resource source identifier envelope plasmid - by Bioz Stars, 2026-05
98/100 stars
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vf20p2 miseq illumina sy 410 1003 cellulose nitrate membrane filters sartorius  (Illumina Inc)
99
Illumina Inc vf20p2 miseq illumina sy 410 1003 cellulose nitrate membrane filters sartorius
Data-guided RNA secondary structure prediction of medaka and human CR4/5 domain. SHAPE (1M7) reactivity data were used as weights to guide RNA structure prediction for medaka (A) and human (B) CR4/5 domains. Using the Biers package of <t>HiTRACE,</t> RNAstructure models of each RNA domain were calculated with 100 bootstrap replicates, while varying the SHAPE slope parameter in intervals of 0.2 kcal/mol. The abundance of each helical RNA element (Confidence) derives from the bootstrap replicates and is plotted for each respective value of SHAPE slope. Ref. Pin refers to Reference hairpin.
Vf20p2 Miseq Illumina Sy 410 1003 Cellulose Nitrate Membrane Filters Sartorius, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/vf20p2 miseq illumina sy 410 1003 cellulose nitrate membrane filters sartorius/product/Illumina Inc
Average 99 stars, based on 1 article reviews
vf20p2 miseq illumina sy 410 1003 cellulose nitrate membrane filters sartorius - by Bioz Stars, 2026-05
99/100 stars
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Image Search Results


Data-guided RNA secondary structure prediction of medaka and human CR4/5 domain. SHAPE (1M7) reactivity data were used as weights to guide RNA structure prediction for medaka (A) and human (B) CR4/5 domains. Using the Biers package of HiTRACE, RNAstructure models of each RNA domain were calculated with 100 bootstrap replicates, while varying the SHAPE slope parameter in intervals of 0.2 kcal/mol. The abundance of each helical RNA element (Confidence) derives from the bootstrap replicates and is plotted for each respective value of SHAPE slope. Ref. Pin refers to Reference hairpin.

Journal: RNA

Article Title: Folding heterogeneity in the essential human telomerase RNA three-way junction

doi: 10.1261/rna.077255.120

Figure Lengend Snippet: Data-guided RNA secondary structure prediction of medaka and human CR4/5 domain. SHAPE (1M7) reactivity data were used as weights to guide RNA structure prediction for medaka (A) and human (B) CR4/5 domains. Using the Biers package of HiTRACE, RNAstructure models of each RNA domain were calculated with 100 bootstrap replicates, while varying the SHAPE slope parameter in intervals of 0.2 kcal/mol. The abundance of each helical RNA element (Confidence) derives from the bootstrap replicates and is plotted for each respective value of SHAPE slope. Ref. Pin refers to Reference hairpin.

Article Snippet: SHAPE-guided predictions were performed with the HiTRACE MATLAB package.

Techniques: RNA Structure Prediction